Shape Analysis Group: Selected Publications

Journals

1. S. Stolpner, S. Whitesides, K. Siddiqi
   Sampled Medial Loci for 3D Shape Representation.
   Computer Vision and Image Understanding, 115, 695-706, 2008.
   PDF © 2008 by Elsevier.
2. P. Savadjiev, J. S. W. Campbell, M. Descoteaux, R. Deriche, G. B. Pike & K. Siddiqi
   Labeling of Ambiguous Sub-voxel Fibre Bundle Configurations in High Angular Resolution Diffusion MRI.
   Neuroimage, 41(1), 58-68, 2008.
   PDF © 2008 by Elsevier.
3. M. Descoteaux, L. Collins & K. Siddiqi
   A Multi-Scale Geometric Flow for Segmenting Vasculature in MRI: Theory and Validation.
   Medical Image Analysis, to appear, 2008.
   PDF © 2008 by Elsevier.
4. K. Siddiqi, J. Zhang, D. Macrini, A. Shokoufandeh, S. Bouix & S. Dickinson
   Retrieving Articulated 3D Models Using Medial Surfaces.
   Machine Vision and Applications, to appear, 2007.
   PDF © 2007 by Springer.
5. I. Reinertsen, M. Descoteaux, K. Siddiqi & D. L. Collins
   Validation of Vessel-Based Registration for Correction of Brain Shift.
   Medical Image Analysis, 11, 374-388, 2007.
   PDF © 2007 by Elsevier.
6. P. Savadjiev, J. S. W. Campbell, G. B. Pike & K. Siddiqi
   3D Curve Inference for Diffusion MRI Regularization and Fibre Tractography.
   Medical Image Analysis, 10(5), 799-813, 2006.
   PDF © 2006 by Elsevier.
7. J. S. W. Campbell, K. Siddiqi, V. V. Rymar, A. F. Sadikot & G. B. Pike.
   Flow-based Fibre Tracking with Diffusion Tensor and Q-Ball Data: Validation and Comparison to Principal Diffusion Orientation Techniques.
   Neuroimage, 27(4), 725-736, 2005.
   PDF © 2005 by Elsevier.
8. A. Shokoufandeh, D. Macrini, S. Dickinson, K. Siddiqi & S. W. Zucker.
   Indexing Hierarchical Structures Using Graph Spectra.
   IEEE Transactions On Pattern Analysis and Machine Intelligence, 27(7), 1125-1140, 2005.
   PDF © 2005 by IEEE.
9. S. Bouix, K. Siddiqi & A. Tannenbaum.
   Flux Driven Automatic Centerline Extraction.
   Medical Image Analysis, 9(3), 209-221, 2005.
   PDF © 2005 by Elsevier.
10. S. Bouix, J. Pruessner, D. L. Collins & K. Siddiqi.
    Hippocampal Shape Analysis Using Medial Surfaces.
    Neuroimage, 25(4), 1077-1089, 2005.
    PDF © 2005 by Elsevier.
11. S. M. Pizer, K. Siddiqi, G. Szekely, J. N. Damon & S. W. Zucker.
    Multiscale Medial Loci and Their Properties.
    International Journal of Computer Vision, 55(2-3), 155-179, 2003.
    PDF © 2003 by Kluwer.
12. M. Audette, K. Siddiqi, F. P. Ferrie & T. M. Peters.
    An Integrated Range-Sensing, Segmentation and Registration Framework for the Characterization of Intra-surgical Brain Deformations in Image-guided Surgery.
    Computer Vision and Image Understanding, 89(2-3), 226-251, 2003.
    PDF © 2003 by Academic.
13. A. Vasilevskiy & K. Siddiqi.
    Flux-Maximizing Geometric Flows
    IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(12), 1565-157 8, 2002.
    PDF © 2002 by IEEE.
14. K. Siddiqi, S. Bouix, A. R. Tannenbaum & S. W. Zucker.
    Hamilton-Jacobi Skeletons.
    International Journal of Computer Vision, 48(3), 215-231, 2002.
    PDF © 2002 by Kluwer.
15. K. Siddiqi, B. B. Kimia, A. R. Tannenbaum & S. W. Zucker.
    On the Psychophysics of the Shape Triangle.
    Vision Research, 41(9), 1153-1178, 2001.
    PDF © 2001 by Elsevier.
16. J. August, K. Siddiqi & S. W. Zucker.
    Ligature Instabilities in the Perceptual Organization of Shape.
    Computer Vision and Image Understanding, 76(3), 231-243, 1999.
    PDF © 1999 by Academic.
17. J. August, K. Siddiqi & S. W. Zucker.
    Contour Fragment Grouping and Shared, Simple Occluders.
    Computer Vision and Image Understanding, 76(2), 146-162, 1999.
    PDF © 1999 by Academic.
18. M. Pelillo, K. Siddiqi & S. W. Zucker.
    Matching Hierarchical Structures Using Association Graphs.
    IEEE Transactions on Pattern Analysis and Machine Intelligence, 21(11),1105-1120 , 1999.
    PDF © 1999 by IEEE.
19. K. Siddiqi, A. Shokoufandeh, S. J. Dickinson & S. W. Zucker.
    Shock Graphs and Shape Matching.
    International Journal of Computer Vision, 35(1), 13-32, 1999.
    PDF © 1999 by Kluwer.
20. K. Siddiqi, B. B. Kimia, A. R. Tannenbaum & S. W. Zucker.
    Shapes, Shocks and Wiggles.
    Image and Vision Computing Journal, 17, 365-373, 1999.
    
21. K. Siddiqi, Y. Berube, A. Tannenbaum, & S. W. Zucker.
    Area and Length Minimizing Flows for Shape Segmentation.
    IEEE Transactions on Image Processing, 7(3), 433-443, 1998.
    PDF © 1998 by IEEE.
22. K. Siddiqi, B. B. Kimia & C. W. Shu.
    Geometric Shock-Capturing ENO Schemes for Subpixel Interpolation, Computation, and Curve Evolution.
    Graphical Models and Image Processing, 59(5), 278-301, 1997.
    TR © 1997 by Elsevier.
23. B. B. Kimia & K. Siddiqi.
    Geometric Heat Equation and Nonlinear Diffusion of Shapes and Images.
    Computer Vision and Image Understanding, 64(3), 305-322, 1996.
    PDF © 1996 by Academic.
24. K. Siddiqi, B. B. Kimia & K. J. Tresness.
    Parts of Visual Form: Psychophysical Aspects.
    Perception, 25(4), 399-424, 1996.
    
25. K. Siddiqi & B. B. Kimia.
    Parts of Visual Form: Computational Aspects.
    IEEE Transactions on Pattern Analysis and Machine Intelligence, 17(3), 239-251, 1995.
    PDF © 1995 by IEEE.
26. R. Kimmel, K. Siddiqi, B. B. Kimia & A. Bruckstein
    Shape from shading: Level Set Propagation and Viscosity Solutions.
    International Journal of Computer Vision, 16(2), 107-133, 1995.
    

Conferences

1. D. Macrini, K. Siddiqi & S. Dickinson
   From Skeletons to Bone Graphs: Medial Abstraction for Object Recognition.
   International Conference On Computer Vision and Pattern Recognition (Anchorage, Alaska), 2008.
   [ PDF] © 2008 by IEEE.
2. S. McCloskey, M. Langer & K. Siddiqi.
   Evolving Measurement Regions for Depth from Defocus.
   8th Asian Conference on Computer Vision (Tokyo), 2007.
   [ PDF] © 2007 by Springer-Verlag.
3. S. McCloskey, M. Langer & K. Siddiqi.
   Automatic Removal of Partial Occlusion Blur.
   8th Asian Conference on Computer Vision (Tokyo), 2007.
   [ PDF] © 2007 by Springer-Verlag.
4. P. Savadjiev, S. W. Zucker & K. Siddiqi.
   On the Differential Geometry of 3D Flow Patterns: Generalized Helicoids and Diffusion MRI Analysis.
   International Conference on Computer Vision (Rio de Janeiro, Brazil), October 2007.
   [ PDF] © 2007 by IEEE.
5. M. Descoteaux, P. Savadjiev, J. S. W. Campbell, G. B. Pike, K. Siddiqi & R. Deriche.
   Validation and Comparison of Analytical Q-Ball Imaging Methods.
   International Symposium On Biomedical Imaging (Washington, D.C.), April 2007.
   [ PDF] © 2007 by IEEE.
6. C. Phillips & K. Siddiqi.
   Grayscale Photograph Geometry Informed by Dodging and Burning.
   5th Indian Conference on Computer Vision, Graphics and Image Processinig (Madurai, India), December 2006.
   [ PDF] © 2006 by Springer-Verlag.
7. S. McCloskey, M. Langer & K. Siddiqi.
   Seeing Around Occluded Objects.
   18th International Conference on Pattern Recognition (Hong Kong), 2006.
   [ PDF] © 2006 by IEEE.
8. S. McCloskey, M. Langer & K. Siddiqi.
   The Reverse Projection Correlation Principle for Depth from Defocus.
   3rd International Symposium on 3D Data Processing, Visualization and Transmission (Chapel Hill, NC), 2006.
   [ PDF] © 2006 by IEEE.
9. S. Stolpner & K. Siddiqi.
   Revealing Significant Medial Structure in Polyhedral Meshes.
   3rd International Symposium on 3D Data Processing, Visualization and Transmission (Chapel Hill, NC), 2006.
   [ PDF] © 2006 by IEEE.
10. J. S. W. Campbell, P. Savadjiev, K. Siddiqi & G. B. Pike.
    Validation and Regularization in Diffusion MRI Tractography.
    International Symposium On Biomedical Imaging (Washington, DC), 2006.
    [ PDF] © 2006 by IEEE.
11. J. Zhang, K. Siddiqi, D. Macrini, A. Shokoufandeh & S. Dickinson.
    Retrieving Articulated 3-D Models Using Medial Surfaces and their Graph Spectra.
    International Workshop On Energy Minimization Methods in Computer Vision and Pattern Recognition (St. Augustine, Florida), 2005.
    [ PDF] © 2005 by Springer-Verlag.
12. P. Savadjiev, J. S. W. Campbell, G. B. Pike & K. Siddiqi.
    3D Curve Inference for Diffusion MRI Regularization.
    International Conference On Medical Image Computing and Computer Assisted Intervention (Palm Springs, California), 2005.
    Best Student Paper Award.
    [ PDF] © 2005 by Springer-Verlag.
13. M. Descoteaux, M. Audette, K. Chinzei & K. Siddiqi.
    Bone Enhancement Filtering: Application to Sinus Bone Segmentation and Simulation of Pituitary Surgery.
    International Conference On Medical Image Computing and Computer Assisted Intervention (Palm Springs, California), 2005.
    [ PDF] © 2005 by Springer-Verlag.
14. M. Descoteaux, L. Collins & K. Siddiqi.
    Geometric Flows for Segmenting Vasculature in MRI: Theory and Validation.
    International Conference On Medical Image Computing and Computer Assisted Intervention (St. Malo, France), 2004.
    [ PDF] © 2004 by Springer-Verlag.
15. I. Reinertsen, M. Descoteaux, S. Drouin, K. Siddiqi & L. Collins.
    Vessel Driven Correction of Brain Shift.
    International Conference On Medical Image Computing and Computer Assisted Intervention (St. Malo, France), 2004.
    [ PDF] © 2004 by Springer-Verlag.
16. M. Descoteaux, L. Collins & K. Siddiqi
    A Multi-Scale Geometric Flow for Segmenting Vasculature in MRI.
    Computer Vision Approaches to Medical Image Analysis and Mathematical Methods in Biomedical Image Analysis Workshop
    (Prague, Czech Republic), 2004.
    [ PDF] © 2004 by Springer-Verlag.
17. J. S. W. Campbell, K. Siddiqi & G. B. Pike.
    Full-brain Q-Ball Imaging in a Clinically Acceptable Time: Application to White Matter Fibre Tractography.
    International Society For Magnetic Resonance in Medicine Scientific Meeting (Kyoto, Japan), 2004.
    [ PDF] © 2004 by ISMRM.
18. J. S. W. Campbell, K. Siddiqi, V. Ryamar, F. Sadikot & G. B. Pike.
    Comparison of Flow- and Streamline-Based Fibre Tracking Algorithms Using an Anisotropic Diffusion Phantom.
    International Society For Magnetic Resonance in Medicine Scientific Meeting (Kyoto, Japan), 2004.
    [ PDF] © 2004 by ISMRM.
19. P. Savadjiev, F. Ferrie & K. Siddiqi.
    Surface Recovery from 3D Point Data Using a Combined Parametric and Geometric Flow Approach.
    International Workshop On Energy Minimization Methods in Computer Vision and Pattern Recognition (Lisbon, Portugal), 2003.
    [ PDF] © 2003 by Springer-Verlag.
20. P. Dimitrov, J. N. Damon & K. Siddiqi.
    Flux Invariants for Shape.
    International Conference On Computer Vision and Pattern Recognition (Madison, Wisconsin), 2003.
    [ PDF] © 2003 by IEEE.
21. S. Bouix, K. Siddiqi & A. Tannenbaum.
    Flux Driven Fly Throughs.
    International Conference On Computer Vision and Pattern Recognition (Madison, Wisconsin), June, 2003.
    [ PDF] © 2003 by IEEE.
22. J. S. W. Campbell, K. Siddiqi, B. C. Vemuri & G. B. Pike.
    A Geometric Flow for White Matter Fibre Tract Reconstruction.
    International Symposium On Biomedical Imaging, July, 2002.
    [ PDF] © 2002 by IEEE.
23. L. Zhu, S. Bouix, S. Haker, K. Siddiqi & A. Tannenbaum.
    Angle-Preserving Mappings for the Visualization of Multi-branched Vessels.
    International Conference On Image Processing (Rochester, New York), 2002.
    [ PDF] © 2002 by IEEE.
24. D. Macrini, A. Shokoufandeh, S. J. Dickinson, K. Siddiqi & S. W. Zucker.
    View-Based 3D Object Recognition Using Shock Graphs.
    International Conference On Pattern Recognition (Quebec City, Quebec, Canada), 2002.
    [ PDF] © 2002 by IEEE.
25. J. S. W. Campbell, K. Siddiqi, Baba C. Vemuri & G. B. Pike.
    A Geometric Flow for White Matter Fibre Tract Reconstruction.
    International Symposium On Biomedical Imaging (Washington, DC), 2002.
    [ PDF] © 2002 by IEEE.
26. S. Bouix, J. Pruessner, D. L. Collins & K. Siddiqi.
    Hippocampal Shape Analysis Using Medial Surfaces.
    International Conference On Medical Image Computing and Computer Assisted Intervention (Utrecht, The Netherlands), 2001.
    [ PDF] © 2001 by Springer-Verlag.
27. K. Siddiqi & A. Vasilevskiy.
    3D Flux Maximizing Flows.
    International Workshop on Energy Minimizing Methods In Computer Vision (Sophia Antipolis, France), 2001.
    [ PDF] © 2001 by Springer-Verlag.
28. A. Vasilevskiy & K. Siddiqi.
    Flux Maximizing Geometric Flows.
    International Conference On Computer Vision (Vancouver, Canada), July, 2001.
    [ PDF] © 2001 by IEEE.
29. M. Bartolli, M. Pelillo, K. Siddiqi, & S. W. Zucker.
    Attributed Tree Homomorphism Using Association Graphs.
    International Conference on Pattern Recognition (Barcelona, Spain), 2000.
    [ PDF] © 2000 by IEEE.
30. S. Bouix & K. Siddiqi
    Divergence-Based Medial Surfaces.
    European Conference on Computer Vision (Dublin, Ireland), 2000.
    [ PDF] © 2000 by Springer-Verlag.
31. P. Dimitrov, C. Phillips & K. Siddiqi.
    Robust and Efficient Skeletal Graphs.
    Conference on Computer Vision and Pattern Recognition (Hilton Head, South Carolina), 2000.
    [ PDF] © 2000 by IEEE.
32. K. Siddiqi, S. Bouix, A. Tannenbaum & S. W. Zucker.
    The Hamilton-Jacobi Skeleton.
    International Conference on Computer Vision (Corfu, Greece), September, 1999.
    [ PDF] © 1999 by IEEE.
33. M. Audette, K. Siddiqi & T. Peters.
    Level-Set Surface Segmentation and Fast Cortical Range Image Tracking
    for Computing Intrasurgical Deformations.
    International Conference on Medical Image Computing and Computer-Assisted Intervention (Cambridge, UK), 1999.
    [ PDF] © 1999 by Springer-Verlag.
34. K. Siddiqi, A. Tannenbaum & S. W. Zucker.
    A Hamiltonian Approach to the Eikonal Equation.
    Workshop on Energy Minimization Methods in Computer Vision and Pattern Recognition (York, UK), 1999.
    [ PDF] © 1999 by Springer-Verlag.
35. J. August, K. Siddiqi & S. W. Zucker.
    Ligature Instabilities in the Perceptual Organization of Shape.
    Conference on Computer Vision and Pattern Recognition (Fort Collins, Colorado), 1999.
    [ PDF] © 1999 by IEEE.
36. A. Shokoufandeh, S. J. Dickinson, K. Siddiqi & S. W. Zucker.
    Indexing using a Spectral Encoding of Topological Structure.
    Conference on Computer Vision and Pattern Recognition (Fort Collins, Colorado), 1999.
    [ PDF] © 1999 by IEEE.
37. M. Pelillo, K. Siddiqi & S. W. Zucker.
    Matching Hierarchical Structures Using Association Graphs.
    Fifth European Conference on Computer Vision (Freiburg, Germany), June, 1998.
    [ PDF] © 1998 by Springer-Verlag.
38. K. Siddiqi, A. Shokoufandeh, S. J. Dickinson & S. W. Zucker.
    Shock Graphs and Shape Matching.
    Sixth International Conference on Computer Vision (Bombay, India), 222-229, 1998.
    [ PDF] © 1998 by IEEE.
39. K. Siddiqi, A. Tannenbaum & S. W. Zucker.
    Hyperbolic ``Smoothing'' of Shapes.
    Sixth International Conference on Computer Vision (Bombay, India), 215-221, 1998.
    [ PDF] © 1998 by IEEE.
40. K. Siddiqi, Y. Berube, A. Tannenbaum, & S. W. Zucker.
    Area and Length Minimizing Flows for Shape Segmentation.
    Conference on Computer Vision and Pattern Recognition (San Juan, Puerto Rico), 621-627, 1997.
    [ PDF] © 1997 by IEEE.
41. J. August, K. Siddiqi & S. W. Zucker.
    Fragment Grouping Via the Principle of Perceptual Occlusion.
    International Conference on Pattern Recognition (Vienna, Austria),1-8, 1996.
    [ PDF] © 1996 by IEEE.
42. K. Siddiqi & B. B. Kimia.
    A Shock Grammar for Recognition.
    Conference on Computer Vision and Pattern Recognition (San Francisco, USA), 507-513, 1996.
    [ PDF] © 1996 by IEEE.
43. K. Siddiqi, B. B. Kimia & C. W. Shu.
    Geometric Shock-Capturing ENO Schemes for Subpixel Interpolation, Computation, and Curve Evolution.
    International Symposium on Computer Vision (Coral Gables, USA), 437-442, 1995.
    [ PDF] © 1995 by IEEE.
44. B. B. Kimia & K. Siddiqi.
    Geometric Heat Equation and Nonlinear Diffusion of Shapes and Images.
    Conference on Computer Vision and Pattern Recognition (Seattle, USA) , 113-120, 1994.
    [ PDF] © 1994 by IEEE.
45. K. Siddiqi & B. B. Kimia.
    Parts of Visual Form: Computational Aspects.
    Conference on Computer Vision and Pattern Recognition (New York, USA) , 75-81, 1993.
    Best Student Paper Award Nomination.
    [ PDF] © 1993 by IEEE.